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ONTOLOGY REPORT - ANNOTATIONS

Term:establishment of planar polarity involved in neural tube closure
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Accession:GO:0090177 term browser browse the term
Definition:Coordinated organization of groups of cells in the plane of an epithelium that contributes to the closure of the neural tube.

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establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTHRC1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18606138) Ensembl
MGI		 PMID:18606138 GO_REF:0000107 NCBI chr 8:98,227,661...98,239,984
Ensembl chr 8:98,227,705...98,240,753 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chr20:3,521,066...3,549,301
Ensembl chr20:3,521,060...3,548,718 		JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19056682) MGI PMID:19056682 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO (PMID:20704721) MGI PMID:20704721 NCBI chr19:28,842,332...29,030,672
Ensembl chr19:28,844,644...29,030,216 		JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571627) Ensembl
MGI
TreeGrafter		 PMID:16571627 GO_REF:0000107 GO_REF:0000118 NCBI chr20:130,105,032...130,118,978
Ensembl chr20:130,104,639...130,117,139 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571627) Ensembl
MGI
TreeGrafter		 PMID:16571627 GO_REF:0000107 GO_REF:0000118 NCBI chr16:6,599,056...6,608,613
Ensembl chr16:6,599,579...6,608,544 		JBrowse link
G DVL3 dishevelled segment polarity protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19008950) TreeGrafter
MGI		 PMID:19008950 GO_REF:0000118 NCBI chr15:5,254,764...5,270,661
Ensembl chr15:5,254,661...5,270,403 		JBrowse link
G FZD1 frizzled class receptor 1 acts_upstream_of_or_within ISO (PMID:20940229) MGI PMID:20940229 NCBI chr21:57,695,000...57,702,666
Ensembl chr21:57,699,468...57,701,417 		JBrowse link
G FZD2 frizzled class receptor 2 acts_upstream_of_or_within ISO (PMID:20940229) MGI PMID:20940229 NCBI chr16:61,837,202...61,839,126
Ensembl chr16:61,837,304...61,839,013 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20643356) Ensembl
MGI		 PMID:20643356 GO_REF:0000107 NCBI chr20:108,338,891...108,375,351
Ensembl chr20:108,330,121...108,361,887 		JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20704721) Ensembl
MGI		 PMID:20704721 GO_REF:0000107 NCBI chr17:29,001,797...29,083,767
Ensembl chr17:29,001,805...29,083,700 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 NCBI chr 8:39,243,775...39,289,050
Ensembl chr 8:39,243,780...39,288,984 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chr 7:100,336,442...100,345,093
Ensembl chr 7:100,336,119...100,345,086 		JBrowse link
G SFRP5 secreted frizzled related protein 5 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chr 9:90,931,819...90,938,156 JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:20643356)
(PMID:19008950)
(PMID:16571627)
(PMID:20940229)
(PMID:18257070)
(PMID:20704721)		 MGI PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... NCBI chr20:3,521,066...3,549,301
Ensembl chr20:3,521,060...3,548,718 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19056682) MGI PMID:19056682 NCBI chr22:16,809,454...16,836,815
Ensembl chr22:16,809,451...16,825,048 		JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19966784) Ensembl
MGI		 PMID:19966784 GO_REF:0000107 NCBI chr 7:57,363,133...57,463,056
Ensembl chr 7:57,387,167...57,462,276 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16925
    developmental process 6667
      anatomical structure morphogenesis 2881
        embryonic morphogenesis 692
          establishment of planar polarity involved in neural tube closure 16
            regulation of establishment of planar polarity involved in neural tube closure + 15
Path 2
Term Annotations click to browse term
  biological_process 16925
    developmental process 6667
      anatomical structure development 6267
        tissue development 2207
          epithelium development 1381
            morphogenesis of an epithelium 592
              epithelial tube morphogenesis 404
                epithelial tube formation 169
                  embryonic epithelial tube formation 156
                    neural tube formation 133
                      primary neural tube formation 120
                        neural tube closure 113
                          establishment of planar polarity involved in neural tube closure 16
                            regulation of establishment of planar polarity involved in neural tube closure + 15
paths to the root